• Fragilariopsis cylindrus
References [ 9 ]
Lyon BR, Lee PA, Bennett JM, DiTullio GR & Janech MG (2011) Proteomic analysis of a sea-ice diatom: Salinity acclimation provides new insight into the dimethylsulfoniopropionate production pathway. Plant Physiology 157: 1926-1941.
Lommer M, Specht M, Roy A, Kraemer L, Andreson R, Gutowska MA, Wolf J, Bergner SV, Schilhabel MB, Klostermeier UC, Beiko RG, Rosenstiel P, Hippler M & LaRoche J (2012) Genome and low-iron response of an oceanic diatom adapted to chronic iron limitation. Genome Biology 13: R66.
Helliwell KE, Wheeler GL, Leptos KC, Goldstein RE & Smith AG (2011) Insights into the evolution of vitamin B12 auxotrophy from sequenced algal genomes. Molecular Biology and Evolution 28: 2921-2933.
Bayer-Giraldi M, Uhlig C, John U, Mock T & Valentin K (2010) Antifreeze proteins in polar sea ice diatoms: diversity and gene expression in the genus Fragilariopsis. Environmental Microbiology 12: 1041-1052.
Kropuenske LR, Mills MM, van Dijken GL, Bailey S, Robinson DH, Welschmeyer NA, Arrigo KR (2009) Photophysiology in two major Southern Ocean phytoplankton taxa: Photoprotection in Phaeocystis antarctica and Fragilariopsis cylindrus. Limnology and Oceanography 54: 1176-1196.
DOI: none
Arrigo KR, Mills MM, Kropuenske LR, van Dijken GL, Alderkamp A & Robinson DH (2010) Photophysiology in two major Southern Ocean phytoplankton taxa: Photosynthesis and growth of Phaeocystis antarctica and Fragilariopsis cylindrus under different irradiance levels. Integrative and Comparative Biology 50: 950-966.
Alderkamp A, Kulk G, Buma AGJ, Visser RJW, van Dijken GL, Mills MM & Arrigo KR (2012) The effect of iron limitation on the photophysiology of Phaeocystis antarctica (Prymnesiophyceae) and Fragilariopsis cylindrus (Bacillariophyceae) under dynamic irradiance. Journal of Phycology 48: 45-59.
Hubbard KA, Rocap G & Armbrust EV (2008) Inter- and intraspecific community structure within the diatom genus Pseudo-Nitzschia (Bacillariophyceae). Journal of Phycology 44: 637-649.
Rampen SW, Schouten S, Panoto FE, Brink M, Andersen RA, Muyzer G, Abbas B & Sinninghe Damste JS (2009) Phylogenetic position of Attheya longicornis and Attheya septentrionalis (Bacillariophyta). Journal of Phycology 45: 444-453.
Sequences [ 4 ]
EMBL/Genbank Links
(Bold text = submission by CCAP staff or collaborators)
18S
Division/Phylum: Heterokontophyta/Ochrophyta Class: Bacillariophyceae Order: Bacillariales

Note: for strains where we have DNA barcodes we can be reasonably confident of identity, however for those not yet sequenced we rely on morphology and the original identification, usually made by the depositor. Although CCAP makes every effort to ensure the correct taxonomic identity of strains, we cannot guarantee that a strain is correctly identified at the species, genus or class levels. On this basis users are responsible for confirming the identity of the strain(s) they receive from us on arrival before starting experiments.
For strain taxonomy we generally use AlgaeBase for algae and Adl et al. (2019) for protists.

Culture media, purity and growth conditions:
Medium: f/2 + Si; Bacteria present; maintained by serial subculture; kept at cicra 0 to 2°C; small colourless flagellate present in small numbers
Attributes
Authority(Grunow) Krieger 1954
IsolatorFryxell
Collection SiteIslas Orcadas Cruise, Station 12 Indian ocean, Antarctica
Climatic Zone Polar
Notes = CCMP 1102; strain used for genome sequencing project
Axenicity Status Bacteria present
Area Antarctica
Environment Marine
GMO No
Group Diatom
Original Designation AA-88H
Pathogen Not pathogenic: Hazard Class 1
Strain Maintenance Sheet SM_MarineDiatomsPolar.pdf
Toxin Producer Not Toxic / No Data
Type Culture No
Taxonomy WoRMS ID 172418
Equivalent StrainsCCMP1102

CCAP 1023/1

Fragilariopsis cylindrus


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