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References [ 2 ]
Hughes AH, Magot F, Tawfike A, Rad-Menéndez C, Thomas N, Young LC, Stucchi L, Carettoni D, Stanley MS, Edrada-Ebel R & Duncan KR (2021) Exploring the chemical space of macro- and micro- algae using comparative metabolomics Microorganisms 9: 311.
Hughes AH, Magot F, Tawfike AF, Rad Menéndez C, Thomas N, Young LC, Stucchi L, Carettoni D, Stanley MS, Edrada-EBel R & Duncan KR (2021) Exploring the chemical space of macro- and micro-algae using comparative metabolomics. Microorganisms 9: 311.
Sequences [ 1 ]
EMBL/Genbank Links
(Bold text = submission by CCAP staff or collaborators)
SSU (18S)
Division/Phylum: Heterokontophyta/Ochrophyta Class: Bacillariophyceae Order: Naviculales

Note: for strains where we have DNA barcodes we can be reasonably confident of identity, however for those not yet sequenced we rely on morphology and the original identification, usually made by the depositor. Although CCAP makes every effort to ensure the correct taxonomic identity of strains, we cannot guarantee that a strain is correctly identified at the species, genus or class levels. On this basis users are responsible for confirming the identity of the strain(s) they receive from us on arrival before starting experiments.
For strain taxonomy we generally use AlgaeBase for algae and Adl et al. (2019) for protists.

Culture media, purity and growth conditions:
Medium: f/2 + Si; Bacteria present; maintained by serial subculture; clonal
Attributes
IsolatorCampbell (2006)
Collection Site Porcupine Abyssal Plain, North Atlantic
Notes Isolation: plating on agar; 18S rDNA sequencing gave best hits as Navicula sp. and Halamphora sp., as light microscopy is not enough to identify between these and given that the taxonomy of pennate diatoms is under revision, the original depositor's designation was kept. SEM images provided by Bondoc-Naumovitz in March 2023 show this is not a Navicula but are not clear as to whether the strain is Halamphora or Amphora. As the sequence blast results are mostly Halamphora we have named the strain as such.
Axenicity Status Bacteria present
Area Europe
Country UK
Environment Marine
GMO No
Group Diatom
In Scope of Nagoya Protocol No
ABS Note Collected pre Nagoya Protocol from a region that is out of scope of the regulation (High Seas)
Collection Date 01/07/2006
Original Designation PAP Navicula
Pathogen Not pathogenic: Hazard Class 1
Strain Maintenance Sheet SM_MarineDiatoms15_20.pdf
Toxin Producer Not Toxic / No Data
Type Culture No
Taxonomy WoRMS ID 574064
Formerly Listed in CCAP asNavicula sp.

CCAP 1050/13

Halamphora sp.


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